London – 12 Month Fixed Term Contract
Paramount are working in partnership with Genomics England to expand their team in order to deliver success with the 100,000 Genomes Project. This is a challenging and fast moving project with the aim to carry out whole genome sequencing on 100,000 participants. Genomics England works with key partners to collect, transport, store, quality check and sequence the samples from participants. The aim for this project is to create a new genomic medicine service for the NHS – transforming the way people are cared for. Patients may be offered a diagnosis where there wasn’t one before. In time, there is the potential of new and more effective treatments.
Genomics England applies state of the art approaches to whole genome sequences for processing, analysis, quality assurance and annotation. This includes integrating phenotypic and other clinical data with whole genome sequencing to create a world-leading, high fidelity data repository for the NHS and third party users.
The Bioinformatics team develops and applies state of the art approaches to 100,000 whole genome sequences (WGS) in the areas of:
*Analysis of WGS in cancer and rare diseases
*Sequence alignment and variant calling of up to 100 genomes per day
*Quality assurance and sample provenance monitoring
This role contributes to the Genomic Interpretation Group’s review and reporting of findings back to the NHS.
*Contribute to our in-house pipeline to analyse WGS data of patients and aid in the interpretation of findings using clinical bioinformatics capabilities
*Perform quality assurance of the analysis and interpretation made by third parties and by our in-house pipeline for both Rare Disease and Cancer.
*Review variant calls in a timely manner that can be used to inform clinical decisions and for research purposes within the NHS GMCs and academic communities.
*Perform user acceptance testing of third party decision support tools for interpretation.
*Handling, troubleshooting and prioritising GMC issues from interpretation/system.
*Support with writing SOPs and documentation about the system.
*Degree level qualification, or equivalent, in a medical science or relevant discipline.
*Demonstrated commitment to quality
*Demonstrate understanding of quality management systems and implementing process improvements and supporting staff with process development and documentation.
*Familiarity with clinical research and the NHS.
*Experience of writing and following Standard Operating Procedures.
*Proven scripting skills (e.g. in one or more of Python, Bash, R, SQL) (essential)
*Proven knowledge/understanding in genetics/genomics and variant calling (essential)
*Knowledge of bioinformatics best practice guidelines (e.g. ACGS)
*Experience of delivering training to a varied audience (desirable)
*Ability to work independently and to show initiative within a team
*Ability to prioritise and balance competing demands
*Ability to communicate effectively within a multidisciplinary team and external stakeholders
*Flexible and co-operative approach to colleagues
There are some great benefits on offer with this role including a competitive salary, pension, generous holidays and more.
Please do not hesitate to contact Harvey Uppal at firstname.lastname@example.org or call (+44) 121 616 3407 to discuss this opportunity further.
Keywords: Clinical, Bioinformatics, Genomics, WGS, Cancer, Disease, Analysis, Variant, Calling, Research, Patient, Data, NHS, Bioinformatician, SOP, Python, Bash, SQL, R, London.
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Job Reference: CBGEL_1518022781
Broadcast As: 18372
Salary To: Negotiable
Job Type: Full Time
Job Term: Permanent
Recruitment Consultant: Harvey Uppal